diff --git a/spring-boot-project/spring-boot-autoconfigure/src/main/java/org/springframework/boot/autoconfigure/batch/BatchAutoConfiguration.java b/spring-boot-project/spring-boot-autoconfigure/src/main/java/org/springframework/boot/autoconfigure/batch/BatchAutoConfiguration.java
index e0ca77d8180..dee16f5b36f 100644
--- a/spring-boot-project/spring-boot-autoconfigure/src/main/java/org/springframework/boot/autoconfigure/batch/BatchAutoConfiguration.java
+++ b/spring-boot-project/spring-boot-autoconfigure/src/main/java/org/springframework/boot/autoconfigure/batch/BatchAutoConfiguration.java
@@ -1,5 +1,5 @@
 /*
- * Copyright 2012-2019 the original author or authors.
+ * Copyright 2012-2021 the original author or authors.
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.
@@ -27,8 +27,10 @@ import org.springframework.batch.core.launch.support.SimpleJobOperator;
 import org.springframework.batch.core.repository.JobRepository;
 import org.springframework.beans.factory.ObjectProvider;
 import org.springframework.boot.ExitCodeGenerator;
+import org.springframework.boot.autoconfigure.AbstractDependsOnBeanFactoryPostProcessor;
 import org.springframework.boot.autoconfigure.AutoConfigureAfter;
 import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
+import org.springframework.boot.autoconfigure.batch.BatchAutoConfiguration.DataSourceInitializerConfiguration.DataSourceInitializationJobRepositoryDependencyConfiguration;
 import org.springframework.boot.autoconfigure.condition.ConditionalOnBean;
 import org.springframework.boot.autoconfigure.condition.ConditionalOnClass;
 import org.springframework.boot.autoconfigure.condition.ConditionalOnMissingBean;
@@ -100,9 +102,11 @@ public class BatchAutoConfiguration {
 		return factory;
 	}
 
-	@Configuration(proxyBeanMethods = false)
-	@ConditionalOnBean(DataSource.class)
-	@ConditionalOnClass(DatabasePopulator.class)
+	// Fully-qualified to work around javac bug
+	@org.springframework.context.annotation.Configuration(proxyBeanMethods = false)
+	@org.springframework.boot.autoconfigure.condition.ConditionalOnBean(DataSource.class)
+	@org.springframework.boot.autoconfigure.condition.ConditionalOnClass(DatabasePopulator.class)
+	@org.springframework.context.annotation.Import(DataSourceInitializationJobRepositoryDependencyConfiguration.class)
 	static class DataSourceInitializerConfiguration {
 
 		@Bean
@@ -114,6 +118,19 @@ public class BatchAutoConfiguration {
 					properties);
 		}
 
+		/**
+		 * Post processor to ensure that {@link JobRepository} beans depend on any
+		 * {@link BatchDataSourceInitializer} beans.
+		 */
+		static class DataSourceInitializationJobRepositoryDependencyConfiguration
+				extends AbstractDependsOnBeanFactoryPostProcessor {
+
+			DataSourceInitializationJobRepositoryDependencyConfiguration() {
+				super(JobRepository.class, BatchDataSourceInitializer.class);
+			}
+
+		}
+
 	}
 
 }
diff --git a/spring-boot-project/spring-boot-autoconfigure/src/test/java/org/springframework/boot/autoconfigure/batch/BatchAutoConfigurationTests.java b/spring-boot-project/spring-boot-autoconfigure/src/test/java/org/springframework/boot/autoconfigure/batch/BatchAutoConfigurationTests.java
index a00dfca3d0d..dcb1c7914f5 100644
--- a/spring-boot-project/spring-boot-autoconfigure/src/test/java/org/springframework/boot/autoconfigure/batch/BatchAutoConfigurationTests.java
+++ b/spring-boot-project/spring-boot-autoconfigure/src/test/java/org/springframework/boot/autoconfigure/batch/BatchAutoConfigurationTests.java
@@ -1,5 +1,5 @@
 /*
- * Copyright 2012-2020 the original author or authors.
+ * Copyright 2012-2021 the original author or authors.
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.
@@ -39,6 +39,7 @@ import org.springframework.batch.core.job.AbstractJob;
 import org.springframework.batch.core.launch.JobLauncher;
 import org.springframework.batch.core.repository.JobRepository;
 import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.beans.factory.config.ConfigurableListableBeanFactory;
 import org.springframework.boot.CommandLineRunner;
 import org.springframework.boot.DefaultApplicationArguments;
 import org.springframework.boot.autoconfigure.AutoConfigurations;
@@ -268,6 +269,20 @@ class BatchAutoConfigurationTests {
 				});
 	}
 
+	@Test
+	void jobRepositoryBeansDependOnBatchDataSourceInitializer() {
+		this.contextRunner.withUserConfiguration(TestConfiguration.class, EmbeddedDataSourceConfiguration.class)
+				.run((context) -> {
+					ConfigurableListableBeanFactory beanFactory = context.getBeanFactory();
+					String[] jobRepositoryNames = beanFactory.getBeanNamesForType(JobRepository.class);
+					assertThat(jobRepositoryNames).isNotEmpty();
+					for (String jobRepositoryName : jobRepositoryNames) {
+						assertThat(beanFactory.getBeanDefinition(jobRepositoryName).getDependsOn())
+								.contains("batchDataSourceInitializer");
+					}
+				});
+	}
+
 	@Configuration(proxyBeanMethods = false)
 	protected static class BatchDataSourceConfiguration {